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refactor: use output directive instead of publish dir mode #215

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refactor: use output directive instead of publish dir mode#215
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kelly-sovacool
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SINCLAIRrefactor
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2026-06

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@kelly-sovacool
kelly-sovacool
opened on Mar 27, 2026

see champagne implementation

https://github.com/CCBR/CHAMPAGNE/blob/990d0a86cf7e2b0a6ed06397b4356a89d23c2488/main.nf#L320

CCBR/CHAMPAGNE#256

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