smunger/pyproject.toml at main · Jianhua-Wang/smunger · GitHub

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[tool]
[tool.poetry]
name = "smunger"
version = "0.1.10"
homepage = "https://github.com/jianhua/smunger"
description = "munger for GWAS summary statistics."
authors = ["Jianhua Wang <jianhua.mert@gmail.com>"]
readme = "README.md"
license =  "MIT"
classifiers=[
    'Development Status :: 2 - Pre-Alpha',
    'Intended Audience :: Developers',
    'License :: OSI Approved :: MIT License',
    'Natural Language :: English',
    'Programming Language :: Python :: 3',
    'Programming Language :: Python :: 3.8',
    'Programming Language :: Python :: 3.9',
]
packages = [
    { include = "smunger" },
    { include = "tests", format = "sdist" },
]

[tool.poetry.dependencies]
python = ">=3.9,<3.13"
typer = ">=0.7.0"
pandas = ">=1.5.3"
rich = ">=13.3.1"
liftover = ">=1.1.16"
requests = ">=2.28.2"
pytabix = ">=0.1"
scipy = ">=1.10.1"
matplotlib = ">=3.7.1"
numpy = ">=1.26.0"


[tool.poetry.dev-dependencies]
black = "^23.9.1"
isort = "^5.12.0"
flake8 = "^6.1.0"
flake8-docstrings = "^1.7.0"
mypy = "^1.5.1"
pytest = "^7.4.2"
pytest-cov = "^4.1.0"
tox = "^4.11.3"
virtualenv = "^20.24.5"
pip = "^23.2.1"
twine = "^4.0.2"
pre-commit = "^3.4.0"
toml = "^0.10.2"
bump2version = "^1.0.1"
jupyter = "^1.0.0"
mkdocs = "^1.5.3"
mkdocs-include-markdown-plugin = "^6.0.1"
mkdocs-material = "^9.4.2"
mkdocs-autorefs = "^0.5.0"
mkdocstrings-python = "^1.7.0"
mkdocs-material-extensions = "^1.2"

# [tool.poetry.extras]
# test = [
#     "pytest",
#     "black",
#     "isort",
#     "mypy",
#     "flake8",
#     "flake8-docstrings",
#     "pytest-cov"
#     ]

# dev = ["tox", "pre-commit", "virtualenv", "pip", "twine", "toml", "bump2version"]

# doc = [
#     "mkdocs",
#     "mkdocs-include-markdown-plugin",
#     "mkdocs-material",
#     "mkdocstrings",
#     "mkdocs-material-extension",
#     "mkdocs-autorefs"
#     ]


[tool.poetry.scripts]
smunger = 'smunger.cli:app'

# [tool.black]
# line-length = 120
# skip-string-normalization = true
# target-version = ['py39', 'py310', 'py311']
# include = '\.pyi?$'
# exclude = '''
# /(
#     \.eggs
#   | \.git
#   | \.hg
#   | \.mypy_cache
#   | \.tox
#   | \.venv
#   | _build
#   | buck-out
#   | build
#   | dist
# )/
# '''

# [tool.isort]
# multi_line_output = 3
# include_trailing_comma = true
# force_grid_wrap = 0
# use_parentheses = true
# ensure_newline_before_comments = true
# line_length = 120
# skip_gitignore = true
# # you can skip files as below
# #skip_glob = docs/conf.py

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"