SpaTalk/DESCRIPTION at main · WaveoffBioMed/SpaTalk · GitHub

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Package: SpaTalk
Title: Spatially Resolved Cell-Cell Communication Inference for Spatial Transcriptomics
Version: 2.0.0
Depends: R (>= 4.0.0), ggalluvial, doParallel
Authors@R: c(
    person("Zaoqu", "Liu", , "liuzaoqu@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0452-742X")),
    person("Xin", "Shao", , "xin_shao@zju.edu.cn", role = c("aut"),
           comment = c(ORCID = "0000-0002-1928-3878")))
Description: Infers spatially resolved cell-cell communications from spatial transcriptomics
    data using graph network and knowledge graph approaches. Supports both single-cell
    resolution and spot-based spatial transcriptomics platforms. Provides cell type
    deconvolution, ligand-receptor interaction analysis, and downstream pathway inference.
URL: https://zaoqu-liu.github.io/SpaTalk/, https://github.com/Zaoqu-Liu/SpaTalk
BugReports: https://github.com/Zaoqu-Liu/SpaTalk/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports:
    Seurat (>= 3.0.0),
    methods,
    reshape2,
    Matrix,
    stringr,
    progress,
    stats,
    utils,
    ggplot2,
    ggExtra,
    crayon,
    ggpubr,
    grDevices,
    scales,
    scatterpie,
    pheatmap,
    corrplot,
    circlize,
    ggraph,
    ggrepel,
    igraph,
    foreach,
    parallel,
    iterators,
    readr,
    digest,
    Rcpp (>= 1.0.0)
LinkingTo: Rcpp, RcppArmadillo
Remotes: linxihui/NNLM
Suggests:
    rmarkdown,
    knitr,
    prettydoc,
    NNLM,
    spacexr,
    SPOTlight,
    deconvSeq,
    reticulate,
    anndata,
    sceasy
VignetteBuilder: knitr