Curated-R

Author: agmcarthur

docs/rgi_main.rst

@@ -321,10 +321,10 @@ RGI main Tab-Delimited Output Details
 |    Antibiotic                                            | ARO Categorization                             |
 +----------------------------------------------------------+------------------------------------------------+
 |    AST_Source                                            | Source of antibiotic susceptibility data       |
-|                                                          | (AST, i.e, phenotypic association)             |
+|                                                          | (mutation-associated resistance only)          |
 +----------------------------------------------------------+------------------------------------------------+
 
-AST_Source: **PubMed**: mutation data hand curated from the scientific literature, evaluated as conferring resistance (R). **CRyPTIC**: mutation data acquired from the `CRyPTIC catalog <https://pubmed.ncbi.nlm.nih.gov/35944069/>`_, evaluated as resistant (R), susceptible (S), or undetermined (U). **ReSeqTB**: mutation data acquired from the `ReSeqTB catalog <https://pubmed.ncbi.nlm.nih.gov/30337678/>`_, evaluated as conferring resistance (Minimal, Moderate, High), not conferring resistance (None), or Indeterminate. **WHO**: mutation data acquired from the `WHO 2023 catalog <https://www.who.int/publications/i/item/9789240082410>`_, evaluated as resistant (R), susceptible (S), or undetermined (U).
+AST_Source: **Curated-R**: mutation data hand curated from the scientific literature, evaluated as conferring resistance (R). **CRyPTIC**: mutation data acquired from the `CRyPTIC catalog <https://pubmed.ncbi.nlm.nih.gov/35944069/>`_, evaluated as resistant (R), susceptible (S), or undetermined (U). **ReSeqTB**: mutation data acquired from the `ReSeqTB catalog <https://pubmed.ncbi.nlm.nih.gov/30337678/>`_, evaluated as conferring resistance (Minimal, Moderate, High), not conferring resistance (None), or Indeterminate. **WHO**: mutation data acquired from the `WHO 2023 catalog <https://www.who.int/publications/i/item/9789240082410>`_, evaluated as resistant (R), susceptible (S), or undetermined (U).
 
 Generating Heat Maps of RGI main Results
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