Summary
In workflow/Snakefile (lines ~21–24):
copyfile from shutil is imported but never called anywhere in the Snakefilecsv is commented out with # Can be disabled?
There's also a TODO comment: # TODO: Test disabling these: above the import block, suggesting this was already recognized but never acted on.
Proposed approach
Remove the unused copyfile import and the commented-out csv import line. Verify no rules rely on these imports being available in scope.
Files to touch
workflow/Snakefile (lines ~21–24)
Summary
In
workflow/Snakefile(lines ~21–24):copyfilefromshutilis imported but never called anywhere in the Snakefilecsvis commented out with# Can be disabled?There's also a TODO comment:
# TODO: Test disabling these:above the import block, suggesting this was already recognized but never acted on.Proposed approach
Remove the unused
copyfileimport and the commented-outcsvimport line. Verify no rules rely on these imports being available in scope.Files to touch
workflow/Snakefile(lines ~21–24)