manual/_quarto.yml at master · iobis/manual · GitHub

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project:
  type: website
  pre-render:
    - sanitize.R
  render:
    - "./*.qmd"
    - "tutorials/**/*.md"
    - "notebooks/**/*.md"
    - "notebooks/*.md"
  post-render:
    - remove-old.R
  output-dir: docs

website:
  title: The OBIS manual
  navbar:
    #logo: images/logo.png
    title: |
      <a class="navbar-brand" href="/"><img src="/images/ioc_logo_black_2.svg" style="height: 40px; margin-right: .7rem !important;" class="me-2"><img src="/images/logo_simple.png" style="height: 30px;"></a>
    right:
    - href: index.qmd
      text: Manual
    - href: tutorials.qmd
      text: Tutorials
    - href: notebooks.qmd
      text: Notebooks
    - href: "https://obis.org/"
      text: "Back to OBIS"
  repo-url:  https://github.com/iobis/manual
  repo-actions: [issue]
  search:
    location: navbar
    type: overlay
  llms-txt: true

  sidebar:
    - id: manual
      title: "Manual"
      style: floating
      search: false
      contents:
        - section: Overview
          contents:
          - index.qmd
          - policy.qmd
          - gethelp.qmd
          - FAQ.qmd
          - linklist.qmd
        - section: Contributing data to OBIS
          contents:
          - contribute.qmd
          - data_standards.qmd
          - nodes.qmd
        - section: Access Data from OBIS
          contents:
          - access.qmd
          - citing.qmd
        - section: Data Standards
          contents:
          - darwin_core.qmd
          - data_format.qmd
          - relational_db.qmd
          - eml.qmd
        - section: Data Formatting
          contents:
          - formatting_intro.qmd
          - formatting.qmd
          - identifiers.qmd
          - name_matching.qmd
          - data_map.qmd
          - checklist.qmd
          - format_occurrence.qmd
          - format_event.qmd
          - format_emof.qmd
          - dna_data.qmd
          - vocabulary.qmd
          - vocab_tree.qmd
          - common_formatissues.qmd
          - examples.qmd
          - other_data_types.qmd
        - section: Ensuring Data Quality
          contents:
          - data_qc.qmd
          - mofreports.qmd
          - lifewatch_qc.qmd
          - dataquality.qmd
          - common_qc.qmd
        - section: Publishing Data
          contents:
          - data_publication.qmd
          - ipt.qmd
          - ipt_admin.qmd
          - data_sharing.qmd
        - section: Data Visualization and Analysis
          contents:
          - dataviz.qmd
        - section: Additional Resources
          contents:
          - other_resources.qmd
    - id: tutorials
      title: "Tutorials"
      style: floating
      search: false
      contents:
        - text: "All tutorials from OBIS"
          href: "obis-tutorials.qmd"
        # - section: "From OBIS"
          # contents:
          #   - text: "Data quality"
          #     href: "https://manual.obis.org/en/data-quality/"
          #   - text: "Data standards"
          #     href: "https://manual.obis.org/en/data-standards/"
            # - text: "From partners"
            #   href: obis-tutorials.qmd
    # tools:
    #   - icon: github
    #     menu:
    #       - text: Source Code
    #         href:  https://github.com/iobis/manual
    #       - text: Report a Bug
    #         href:  https://github.com/iobis/manual/issues

format:
  html:
    theme:
      - cosmo
      - brand
    css: style.css
    toc: true
    toc-depth: 3
    toc-expand: 3