build(deps): bump actions/checkout from 4 to 5 #601
dependabot[bot]ci.yaml
on: pull_request
test-pathogen-repo-build-aws-batch
/
workflow-context
6s
test-pathogen-repo-ci
/
configuration
3s
test-pathogen-repo-ci
/
workflow-context
4s
test-docs-ci-conda
/
build
6m 22s
test-docs-ci-pip
/
build
1m 32s
lint
5s
Matrix: test-pathogen-repo-build
Matrix: test-setup-nextstrain-cli
test-pathogen-repo-build-aws-batch
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run-build
5m 58s
Matrix: test-pathogen-repo-ci / nextstrain-build
test-pathogen-repo-build-aws-batch
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cancellation
0s
test-pathogen-repo-build-aws-batch-id-output
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workflow-context
6s
test-pathogen-repo-build-aws-batch-id-output
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run-build
16s
test-pathogen-repo-build-aws-batch-id-output
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wait-1
0s
test-pathogen-repo-build-aws-batch-id-output
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wait-2
0s
test-pathogen-repo-build-aws-batch-id-output
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wait-3
0s
test-pathogen-repo-build-aws-batch-id-output
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wait-4
0s
test-pathogen-repo-build-aws-batch-id-output
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cancellation
0s
Annotations
1 error, 3 warnings, and 1 notice
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lint
Process completed with exit code 2.
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test-docs-ci-conda / build
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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test-docs-ci-conda / build
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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test-docs-ci-conda / build
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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test-setup-nextstrain-cli (os=windows-latest)
The windows-latest label will migrate from Windows Server 2022 to Windows Server 2025 beginning September 2, 2025. For more information see https://github.com/actions/runner-images/issues/12677
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build-output-aws-batch
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sha256:a2199edf0f61e115b2bf031bf290b0d52c8e10d150d198a77a966dfda343362c
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build-output-aws-batch-reattached
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build-output-conda
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build-output-docker
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sha256:9d8905ae806e590ab96c8c06168623a646d28dbbb0efbea047b3447417e55d23
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outputs-test-pathogen-repo-ci-conda
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sha256:26a0e88168f6816ca821acb80db5440c25aa423e518b5bd598095d24201731e3
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outputs-test-pathogen-repo-ci-docker
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sha256:246cb08a62a9c0cf4bdf8d1f31c5f317eef0b1c2d9a15c4afe0b217ee2438f9d
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