CI #4497
nextstrain-botci.yaml
on: schedule
Matrix: pytest-cram
mypy
56s
pyright
23s
check-docs
39s
check-subsample-config-schema
52s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
19s
rebuild-docker-image
0s
Annotations
20 warnings
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (nipah)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pytest-cram (python=3.12 biopython numpy==1.*)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-e92b363-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58-file-7f19b182a58d9b124966baf5507035d2f68d1548acd25246f4c7270b335c4900, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (WNV)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (norovirus)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pytest-cram (python=3.14 biopython==1.86 numpy==2.3.2)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-f1d7981-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58-file-7f19b182a58d9b124966baf5507035d2f68d1548acd25246f4c7270b335c4900, another job may be creating this cache.
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pathogen-repo-ci (rubella)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2026-05-28-linux-64-augur-args-30d39f4-root-dcc80ee-bin-e9683b483df06dbd3fdd8a37f1b6826d7e5caf4e85bf15a0af4fbad3d4ad1a58, another job may be creating this cache.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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224 KB |
sha256:9287fbcd66f3779f78234eaf11a4229feb2c35fb4cdb10a27bb93ab0be0ba724
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output-WNV
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978 KB |
sha256:5ff641b10d217929ecc8c75436f241e0eb6799c397dfa9b2cef3ecc235450d77
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output-avian-flu
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109 KB |
sha256:582be3b2b2284c34b7ee4326575f1edc986fdeda93f696921278f0f7bd7672d4
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output-dengue
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435 KB |
sha256:bf3206f4dbb0d5d7b7515a00fab5673511f16d987b538b2900b9ffdc1d9f44c5
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output-lassa
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369 KB |
sha256:e28e7c2d25cdbd2f32e29ce1aa18fd4856568d2e2514cd748d6bc94586a3fd84
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output-measles
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10.9 MB |
sha256:4c5d45bd43edbed77381027faa597aedb0cbbb86e3e914b57bd511fef4db7d57
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output-mpox
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22.4 MB |
sha256:33f8c4b82b06e8897d0e380dfd88490713410762d2587e65aa4fa7897994ad1a
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output-mumps
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379 KB |
sha256:d5fc7882f45359a9cbb63d9a03f0bdbe0e64d63c2062eae55839b506f1611bd3
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output-ncov
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715 KB |
sha256:6164a4dee8bc7fe5a53cdc7ac6993a535e0b9e9689f9a08c2d667167991c0ca6
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output-nipah
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1.29 MB |
sha256:3947c6252f1204350ff1e7d8f4adc49f73bdd9f52920d447236b112e733ee81c
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output-norovirus
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3.2 MB |
sha256:d5450c69c8f18b5ae99293c4558c3356463b8cf712bc7971b614650580743662
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output-oropouche
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593 KB |
sha256:6a670ee8e75fc523813def0fa47743033bf9d49576ea167f6efb625a4688d98f
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output-rabies
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5.4 MB |
sha256:6b8c622f5a6313f511e6c446bad787236ba1150dcca94b369e25c0e2b6ba8b4b
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output-rsv
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664 KB |
sha256:91158caec183669bd988f5e057fb9febe48b659a145fe7c0e0a93ca1bd530526
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output-rubella
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1.67 MB |
sha256:214721f1d6f4a8290039e7b20b39b58f784cb983e5cb67108468cf92227e93c8
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output-seasonal-cov
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2.81 MB |
sha256:75c9d3e19b93f156c663047b38ebeb51fc0616e14a5e24d43014a31c0c7156a1
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output-seasonal-flu
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57 KB |
sha256:76e54193da2c9ea35ab56abc48b42fdc5c3c978867001891c134e3543904ffaf
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output-vcf-input-tutorial
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5.03 MB |
sha256:51a9e5efa879e8242a6af230925315b2662ec203e8e930463f17b973f5012568
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output-yellow-fever
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1.44 MB |
sha256:2b996879422c8927ee84b426f9ce99f4bbb43e36af6fb3c9c2910d721e410d6c
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output-zika
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846 KB |
sha256:855d8d006b23b2814f8d530cee0df9c0a553a2ffbeb21e253ce19e931c74beaa
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