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    255 repositories

    • med-image_index

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Jul 22, 2026Jul 22, 2026

    • handbook

      Public
      Lab Handbook For BHKLab
      0•3•43•4•Updated Jul 22, 2026Jul 22, 2026

    • STS-data-ingestion

      Public
      Repository containg database models, extraction pipelines (from and .rds to csv), and database seeding scripts for the Small Tissue Sarcoma Data Portal project
      Python
      •0•0•0•1•Updated Jul 22, 2026Jul 22, 2026

    • nbia-toolkit

      Public
      Python package for programmatic access to the National Biomedical Imaging Archive (NBIA) and The Cancer Imaging Archive (TCIA)
      dicomapi-clientsorting-algorithms
      dicomapi-clientsorting-algorithmsdicom-imagesoauth2-clientmedical-informaticstcia-dacidctciamedical-imaging-datasets
      Python
      •
      MIT License
      •1•11•6•1•Updated Jul 21, 2026Jul 21, 2026

    • ORCESTRA

      Public
      ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).
      JavaScript
      •
      Apache License 2.0
      •2•5•29•8•Updated Jul 20, 2026Jul 20, 2026

    • mRMRe

      Public
      mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection
      cran
      cran
      C++
      •6•21•15•0•Updated Jul 20, 2026Jul 20, 2026

    • readii_2_roqc

      Public
      Jupyter Notebook
      •1•2•4•1•Updated Jul 16, 2026Jul 16, 2026

    • AnnotationGx

      Public
      An R package to query various bio/chem-informatics databases APIs to construct annotation files.
      R
      •
      MIT License
      •1•2•9•3•Updated Jul 15, 2026Jul 15, 2026

    • med-imagenet

      Public
      Med-ImageNet: A Standardized Resource for AI-Ready Oncology Imaging
      Python
      •
      GNU General Public License v3.0
      •0•2•2•0•Updated Jul 13, 2026Jul 13, 2026

    • deep-concordance-models

      Public
      Training models to order cell lines by vulnerability in the presence of phenotypic measurement noise
      Jupyter Notebook
      •0•0•0•0•Updated Jul 13, 2026Jul 13, 2026

    • SignatureSets

      Public
      Compendium of published molecular signatures
      HTML
      •
      MIT License
      •0•0•0•1•Updated Jul 13, 2026Jul 13, 2026

    • science-portal-mailing

      Public
      Python
      •1•0•2•1•Updated Jul 9, 2026Jul 9, 2026

    • adc-embeddings

      Public
      Constructing Neural Embeddings of the content from the ADCDB
      Python
      •0•0•0•0•Updated Jul 8, 2026Jul 8, 2026

    • bhklab-website

      Public
      BHK Lab website
      JavaScript
      •0•0•6•0•Updated Jun 30, 2026Jun 30, 2026

    • med-imagetools

      Public
      Transparent and reproducible medical image processing pipelines in Python.
      pythonmachine-learningdeep-learning
      pythonmachine-learningdeep-learningdicomtorchpytorchmedicalnrrdnifti
      Python
      •
      MIT License
      •11•60•31•7•Updated Jun 30, 2026Jun 30, 2026

    • nci60-pharmacoset_snakemake

      Public
      R
      •0•0•0•0•Updated Jun 26, 2026Jun 26, 2026

    • CoreGx

      Public
      Shared code for both PharmacoGx and RadioGx
      pharmacogx-backendradiogxpharmacogx
      pharmacogx-backendradiogxpharmacogxtoxicogx
      R
      •
      GNU General Public License v3.0
      •3•2•11•1•Updated Jun 24, 2026Jun 24, 2026

    • orcestra-new-api

      Public
      Python
      •1•0•10•0•Updated Jun 22, 2026Jun 22, 2026

    • ab-testing

      Public
      Python
      •0•0•0•0•Updated Jun 19, 2026Jun 19, 2026

    • autowatchman

      Public
      Radiomic analysis for the AutoWATChmAN project
      Python
      •0•0•0•1•Updated Jun 19, 2026Jun 19, 2026

    • orcestra-jenkins-shared-library

      Public
      Source Repo for reusable groovy functions used in Jenkins Pipelines
      Groovy
      •0•0•0•0•Updated Jun 12, 2026Jun 12, 2026

    • jenkinsfile-generic-pipeline-templates

      Public
      Repo that houses jenkinsfiles to run pipelines that use different environment/package managers
      Dockerfile
      •0•0•0•0•Updated Jun 11, 2026Jun 11, 2026

    • ml-pipeline-aircheck

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Jun 2, 2026Jun 2, 2026

    • mcgill-xevaset

      Public
      R
      •0•0•0•0•Updated May 29, 2026May 29, 2026

    • novartis_pdxe_xevaset

      Public
      HTML
      •0•0•1•0•Updated May 29, 2026May 29, 2026

    • PredictIO-MV-Dist

      Public
      Distributed multivariable predictive modelling for Immuno-Oncology response
      R
      •0•1•17•1•Updated May 28, 2026May 28, 2026

    • bhklab-dicom-anonymizer

      Public
      BHKLab DICOM Anonymizer is code to run on DICOM data that needs to be anonymized so we can analyze it.
      Jupyter Notebook
      •0•0•0•0•Updated May 27, 2026May 27, 2026

    • readii-fmcib

      Public
      Taming the unicorn that is FMCIB
      Python
      •
      MIT License
      •0•2•1•0•Updated May 27, 2026May 27, 2026

    • PharmacoGx

      Public
      R package to analyze large-scale pharmacogenomic datasets.
      datasetspharmacogxpharmacogenomic
      datasetspharmacogxpharmacogenomic
      R
      •
      GNU General Public License v3.0
      •26•70•74•4•Updated May 26, 2026May 26, 2026

    • ocscc-tumor-characterization

      Public
      OCSCC Tumor Characterization applies MedSAM segmentation to an oral cavity squamous cell cancer patient cohort to explore how it affects treatment planning.
      Jupyter Notebook
      •0•0•0•1•Updated May 21, 2026May 21, 2026
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