Repositories list

• QFeaturesGUI

  Public
  A simple GUI to use the main features of the QFeatures package.

  guivisualisationproteomics+ 1

  guivisualisationproteomicsqfeatures

  R

  •

  Other

  •33 forks•33 stars•2121 issues•33 pull requests•Updated May 29, 2026May 29, 2026

• MsBackendMetabolomicsWorkbench

  Public
  MsBackend allowing to retrieve and cache MS data from the public Metabolomics Workbench repository.

  R

  •00 forks•00 stars•00 issues•11 pull request•Updated May 29, 2026May 29, 2026

• MsBackendMassIVE

  Public
  MS data backend for MS data files stored in MassIVE.

  R

  •00 forks•11 star•11 issue•00 pull requests•Updated May 28, 2026May 28, 2026

• Chromatograms

  Public
  Low level infrastructure to handle chromatograms

  R

  •00 forks•22 stars•1111 issues•00 pull requests•Updated May 26, 2026May 26, 2026

• MsBackendMetaboLights

  Public
  MsBackend allowing to retrieve MS data from the MetaboLights repository.

  metabolomicsmass-spectrometrymetabolomics-data

  metabolomicsmass-spectrometrymetabolomics-data

  R

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 22, 2026May 22, 2026

• RforMassSpectrometry.org

  Public
  The R for Mass Spectrometry Initiative home page

  rstatsbioconductormass-spectrometry

  rstatsbioconductormass-spectrometry

  HTML

  •66 forks•1111 stars•33 issues•00 pull requests•Updated May 22, 2026May 22, 2026

• book

  Public
  R for Mass Spectrometry documentation

  documentationproteomicsmetabolomics+ 1

  documentationproteomicsmetabolomicsmass-spectrometry

  HTML

  •88 forks•1515 stars•44 issues•11 pull request•Updated May 22, 2026May 22, 2026

• RuSirius

  Public
  Interface between the RforMassSpectrometry packages and the Sirius software suite.

  R

  •11 fork•22 stars•44 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• RmzTabM

  Public
  R API for import and export of metabolomics and lipidomics results in mzTab-M format.

  R

  •22 forks•33 stars•1111 issues•11 pull request•Updated May 21, 2026May 21, 2026

• rformassspectrometry.r-universe.dev

  Public
  The R for Mass Spectrometry R Universe

  00 forks•11 star•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• PSMatch

  Public
  Peptide Spectrum Matching

  rstatsproteomicsmass-spectrometry+ 1

  rstatsproteomicsmass-spectrometrypeptide-spectrum-matches

  R

  •22 forks•66 stars•00 issues•22 pull requests•Updated May 21, 2026May 21, 2026

• stickers

  Public
  Sticker for RforMassSpectrometry

  R

  •33 forks•11 star•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• PTMods

  Public
  Amino acid modifications for mass spectrometry

  rproteinproteomics+ 2

  rproteinproteomicsmass-spectrometryamino-acid-modifications

  R

  •22 forks•1111 stars•55 issues•00 pull requests•Updated May 19, 2026May 19, 2026

• MsBackendMzPeak

  Public
  Spectra MS backend class(es) supporting the new HUPO-PSI mzPeak file format for MS data.

  R

  •00 forks•00 stars•11 issue•00 pull requests•Updated May 18, 2026May 18, 2026

• SpectraVis

  Public
  Visualising Spectra Data

  visualisationrstatsbioconductor+ 4

  visualisationrstatsbioconductorproteomicsmetabolomicsmass-spectrometryspectra

  R

  •00 forks•44 stars•22 issues•00 pull requests•Updated May 16, 2026May 16, 2026

• MsStash

  Public
  A secret place to safely store your mass spectrometry result objects.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 12, 2026May 12, 2026

• SpectriPy

  Public
  Interfacing R's Spectra package with the Python world.

  pythoninfrastructurerstats+ 1

  pythoninfrastructurerstatsmass-spectrometry

  R

  •

  Artistic License 2.0

  •77 forks•1313 stars•77 issues•11 pull request•Updated May 12, 2026May 12, 2026

• RforMassSpectrometry

  Public
  The R for Mass Spectrometry meta-package

  R

  •88 forks•2020 stars•22 issues•00 pull requests•Updated May 11, 2026May 11, 2026

• MsCoreUtils

  Public
  Core Utils for Mass Spectrometry Data

  utilsrstatsbioconductor+ 3

  utilsrstatsbioconductorproteomicsmetabolomicsmass-spectrometry

  R

  •1212 forks•1717 stars•88 issues•22 pull requests•Updated May 11, 2026May 11, 2026

• QFeatures

  Public
  Quantitative features for mass spectrometry data

  rstatsbioconductorproteomics+ 2

  rstatsbioconductorproteomicsmetabolomicsmass-spectrometry

  R

  •88 forks•2929 stars•3535 issues•00 pull requests•Updated May 3, 2026May 3, 2026

• SpectraQL

  Public
  Mass Spec Query Language (MassQL) support for Spectra

  R

  •44 forks•1010 stars•77 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• MetaboCoreUtils

  Public
  Core utilities for metabolomics.

  metabolomicsmass-spectrometry

  metabolomicsmass-spectrometry

  R

  •66 forks•99 stars•88 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• StashSpectra

  Public
  Save/read Spectra objects in/from an interoperable format.

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• MsDataHub

  Public
  Mass Spectrometry Data on ExperimentHub

  datarbioconductor+ 4

  datarbioconductorproteomicsmetabolomicsmass-spectrometryr-package

  R

  •44 forks•11 star•33 issues•11 pull request•Updated Apr 22, 2026Apr 22, 2026

• MsIO

  Public
  Serializing/importing mass spectrometry data objects eventually using language-agnostic formats.

  proteomicsmetabolomicsmass-spectrometry

  proteomicsmetabolomicsmass-spectrometry

  R

  •22 forks•33 stars•99 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• Spectra

  Public
  Low level infrastructure to handle MS spectra

  rstatsbioconductorproteomics+ 3

  rstatsbioconductorproteomicsmetabolomicsmass-spectrometryhacktoberfest

  R

  •2626 forks•4646 stars•4444 issues•11 pull request•Updated Apr 8, 2026Apr 8, 2026

• Metabonaut

  Public
  workflowreproducible-researchmetabolomics+ 1

  workflowreproducible-researchmetabolomicsmass-spectrometry

  TeX

  •77 forks•1212 stars•66 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• MetaboAnnotation

  Public
  High level functionality to support and simplify metabolomics data annotation.

  annotationmetabolomicsmass-spectromtry

  annotationmetabolomicsmass-spectromtry

  R

  •88 forks•2020 stars•1919 issues•11 pull request•Updated Mar 19, 2026Mar 19, 2026

• CompoundDb

  Public
  Creating and using (chemical) compound databases

  annotationdatabasesrstats+ 2

  annotationdatabasesrstatsmetabolomicsmass-spectrometry

  R

  •1616 forks•1919 stars•2828 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• MsBackendMassbank

  Public
  A prototype backend to parse MassBank records into Spectra

  spectramassbank

  spectramassbank

  R

  •55 forks•33 stars•77 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026