version bump

Author: nevrome

CHANGELOG.md

@@ -1,3 +1,6 @@
+- V 2.1.3.0:
+    - Removed tedious `PoseidonID/Group_Name should only contain alphanumeric characters ...` warning.
+    - Introduced a quoting feature for the forge language to handle entity names that would usually break the parser, e.g. names containing `':', ',', '<', '>', '*'`.
 - V 2.1.2.2:
     - Better .tsv encoding and quoting for `writeJannoFileWithoutEmptyCols`, so in `trident rectify --jannoRemoveEmpty`. The previous solution generated broken output in combination with certain unicode characters.
 - V 2.1.2.1:

poseidon-hs.cabal

@@ -1,5 +1,5 @@
 name:                poseidon-hs
-version:             2.1.2.2
+version:             2.1.3.0
 synopsis:            A package with tools for working with Poseidon genotype data
 description:         The tools in this package read and analyse Poseidon-formatted genotype databases, a modular system for storing genotype data from thousands of individuals.
 license:             MIT

test/PoseidonGoldenTests/GoldenTestCheckSumFile.txt

@@ -134,7 +134,7 @@ ad7e56177aad0a720f0bde13d47f2ac1 forge forge/ForgePac19/CHANGELOG.md
 3288b6ff2d7b02eec0f34a8434e4b7e3 forge forge/ForgePac20/POSEIDON.yml
 100405d0cc3bf72c1c3d7b87b7a22029 forge forge/ForgePac20/ForgePac20.janno
 ef1646043331ed9d67e4072ee46eb9f4 forge forge/ForgePac21/POSEIDON.yml
-581d24d33d6bf921276e49d2c5dae099 forge forge/ForgePac21/ForgePac21.vcf
+0bd2498ac2af532c2772fb125078a1a8 forge forge/ForgePac21/ForgePac21.vcf
 848cf0fab32e4078a88cc17ad8ec3381 forge forge/ForgePac21/ForgePac21.janno
 a1daaa1ebc9c93405acb4a0f24ffa355 forge forge/ForgePac21/ForgePac21.ssf
 b4f71aff4fbc11594008c3811781cc43 forge forge/ForgePac21/ForgePac21.bib

test/PoseidonGoldenTests/GoldenTestData/chronicle/chronicle2.yml

@@ -5,25 +5,25 @@ lastModified: 2026-07-11
 packages:
 - title: Lamnidis_2018
   version: 1.0.0
-  commit: 57a1654aa57aed0766a7fbfd911189a45c2e4e1c
+  commit: 93bc8af032f3a46f66d074fbd90291fa48029834
   path: Lamnidis_2018
 - title: Lamnidis_2018
   version: 1.0.1
-  commit: 57a1654aa57aed0766a7fbfd911189a45c2e4e1c
+  commit: 93bc8af032f3a46f66d074fbd90291fa48029834
   path: Lamnidis_2018_newVersion
 - title: Schiffels
   version: 1.1.1
-  commit: eb702d9291d09b83b7d0105d9d8523cc19498893
+  commit: 761702c05b524c29f8b9cc45cd13d106e08692f3
   path: Schiffels
 - title: Schiffels_2016
   version: 1.0.1
-  commit: 57a1654aa57aed0766a7fbfd911189a45c2e4e1c
+  commit: 93bc8af032f3a46f66d074fbd90291fa48029834
   path: Schiffels_2016
 - title: Schmid_2028
   version: 1.0.0
-  commit: 57a1654aa57aed0766a7fbfd911189a45c2e4e1c
+  commit: 93bc8af032f3a46f66d074fbd90291fa48029834
   path: Schmid_2028
 - title: Wang_2020
   version: 0.1.0
-  commit: 57a1654aa57aed0766a7fbfd911189a45c2e4e1c
+  commit: 93bc8af032f3a46f66d074fbd90291fa48029834
   path: Wang_2020

test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac21/ForgePac21.vcf

@@ -1,5 +1,5 @@
 ##fileformat=VCFv4.2
-##source=trident_v2.1.2.2
+##source=trident_v2.1.3.0
 ##group_names=POP2,POP2,POP2,POP2,3,5
 ##genetic_sex=F,F,M,F,F,F
 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">