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Main new feature: ntSynt-viz now outputs interactive HTML ribbon plots
Interactive features:
Hover/click on a chromosome to see the ID and length
Hover/click on a ribbon to outline the entire synteny block across all the genomes, and see the coordinates in each genome
Click on a chromosome in the colour legend to highlight all the synteny blocks mapping to that chromosome
New parameter: --optimize-ordering
if specified, will optimize the top-to-bottom ordering based on minimizing total pairwise inversions, while respecting the topology of the tree/cladogram
New output: *LLM-info.md
Markdown and ribbon plot image (PNG format) can be supplied to any LLM to generate a short summary of the output ribbon plot