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Using quant to identify transcripts

Status: Open.

#164 In COMBINE-lab/alevin-fry;

· olazaro-ibri opened on Jun 16, 2026

best practices for RAD/collate/quant and file alignment

Status: Open.

#158 In COMBINE-lab/alevin-fry;

· lilyzhou222 opened on Oct 16, 2025

alevin-fry for transcript-level quantifcation

Status: Open.

#155 In COMBINE-lab/alevin-fry;

· hwoodw03 opened on Jun 16, 2025

alevin-fry quant slightly inconsistent results

Status: Open.

#153 In COMBINE-lab/alevin-fry;

· nschcolnicov opened on Feb 20, 2025

Begin Outputting AnnData file format

Status: Open.

#151 In COMBINE-lab/alevin-fry;

· ilan-gold opened on Dec 4, 2024

alevin-fry infer unable to read mtx

Status: Open.

#150 In COMBINE-lab/alevin-fry;

· sojichld opened on Nov 19, 2024

Error while aligning 10X CRISPR 5' screening scRNAseq data

Status: Open.

#145 In COMBINE-lab/alevin-fry;

· eynullazada opened on Jul 9, 2024

Metrics for reads on a high multimapping genome

Status: Open.

#144 In COMBINE-lab/alevin-fry;

· tbrunetti opened on Jul 8, 2024

CorrectedReads in featureDump.txt

Status: Open.

#134 In COMBINE-lab/alevin-fry;

· wangjiawen2013 opened on Feb 5, 2024

almost no genes detected

Status: Open.

#133 In COMBINE-lab/alevin-fry;

· wangjiawen2013 opened on Feb 1, 2024

zero-length barcode

Status: Open.

#132 In COMBINE-lab/alevin-fry;

· wangjiawen2013 opened on Feb 1, 2024

Using genotype based demultiplexing tools on alevin-fry output

Status: Open.

#128 In COMBINE-lab/alevin-fry;

· changostraw opened on Jan 18, 2024