Hippocampal Dissociated Culture

MiV-Simulator simulation case for experiment + simulator comparison work.

Description

Features

• Electrical stimulation
• Gfluct3: spontaneous firing mechanism

Run Files

• aggregate.py
• jobscripts: slurm job scripts
  • Expanse (SDSC)
    1. slurm_build_coords.sh
    2. build connection
       • slurm_PYR_synapses.sh
       • slurm_PVBC_synapses.sh
       • slurm_OLM_synapses.sh
    3. slurm_aggregate.sh
    4. slurm_run.sh

Output

• datasets: h5 data files containing simulation construction
• results: h5 data files containing result

Simulation Files

• config: Yaml configuration file collection
• morphology: morphology files (.swc)
• mechanisms: NEURON mechanism mod files
• templates: neuron model file

References