Search results

An error should be generated if we try to make downsampled stacks and stitched images are different sizes

bug

minor

Status: Open.

#216 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Apr 17, 2026

Add option to pool the average tiles over all depths

enhancement

minor

Status: Open.

#215 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Mar 26, 2026

Why are we using imread instead of fread as done in MaSIV?

high priority

minor

Status: Open.

#213 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Dec 9, 2024

syncAndCrunch on single machine systems should be able to autofind the acquisition folder

high priority

Status: Open.

#212 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Sep 20, 2024

stitchAllChannels fails on NIN acq PC

bug

high priority

Status: Open.

#211 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Sep 20, 2024

syncAndCrunch on finished folder gives a cryptic error message

Status: Open.

#210 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Jan 12, 2024

Add check for corrupt raw data files

high priority

Status: Open.

#208 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Nov 17, 2023

Use minimum of average template as its offset

Status: Open.

#207 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Jun 29, 2023

SyncAndCrunch fails to start if current folder is the microscope raw data folder

bug

Status: Open.

#206 In SWC-Advanced-Microscopy/StitchIt;

· mkrumin opened on Jan 18, 2023

samplesplitter should list % decrease in data size

minor

Status: Open.

#205 In SWC-Advanced-Microscopy/StitchIt;

· raacampbell opened on Dec 1, 2022

syncadncrunch logic at the end of the acquisition on slow connection

Status: Open.

#204 In SWC-Advanced-Microscopy/StitchIt;

· mkrumin opened on Nov 25, 2022

syncAndCrunch fails to generate preview (slow connection?)

Status: Open.

#203 In SWC-Advanced-Microscopy/StitchIt;

· mkrumin opened on Nov 25, 2022