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Pull requests: fulcrumgenomics/twistcgp

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Pull requests list

docs: add Zenodo DOI badge and pipeline citations
#136 opened Jul 19, 2026 by nh13 Member Loading…
1
refactor: use fgumi/dedup instead of Picard MarkDuplicates
#135 opened Jul 17, 2026 by emmcauley Collaborator Loading…
@znorgaard
8
refactor: use fgumi fastq instead of samtools fastq in ALIGNBAM
#131 opened Jul 17, 2026 by emmcauley Collaborator Loading…
@znorgaard
4
fix: ALIGNBAM template-coordinate sort, index-prefix discovery, stray backtick
#129 opened Jul 16, 2026 by emmcauley Collaborator • Draft
1
refactor: remove unused gnomAD VCF staging (--gnomad_vcf/--gnomad_tbi)
#128 opened Jul 16, 2026 by emmcauley Collaborator • Draft
1
additional refinements [feature branch] feature branch
#127 opened Jul 16, 2026 by emmcauley Collaborator • Draft
2 of 6 tasks
1
refactor: swap mako in for samtools sort
#124 opened Jul 14, 2026 by emmcauley Collaborator Loading…
@znorgaard
5
test(data): add VEP/SnpEff cache subsets + hotspot fixtures for nf-test
#122 opened Jul 13, 2026 by emmcauley Collaborator • Draft
1
fix: build VEP cosmic --custom arg without file() in a config closure
#121 opened Jul 12, 2026 by emmcauley Collaborator Loading…
@emmcauley
2
feature branch: FG stack [in progress] feature branch
#115 opened Jul 10, 2026 by emmcauley Collaborator Loading…
6 of 10 tasks
1
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