feat(OMERO): ✨ Add ROI upload to OMERO script

src/main/resources/scripts/Plugins/IMCF_Utilities/OMERO/upload_rois_to_omero.py

@@ -0,0 +1,57 @@
+# @ String(label="Username", description="please enter your username") USERNAME
+# @ String(label="Password", description="please enter your password", style="password") PASSWORD
+# @ ImagePlus imp
+# @ RoiManager rm
+
+# ─── Imports ──────────────────────────────────────────────────────────────────
+
+import os
+from ij import IJ, WindowManager as wm
+
+from java.lang import Long
+
+from imcflibs.imagej import omerotools
+
+from fr.igred.omero import Client
+from fr.igred.omero.roi import ROIWrapper
+
+# ─── Functions ────────────────────────────────────────────────────────────────
+
+# ─── Variables ────────────────────────────────────────────────────────────────
+
+# OMERO server info
+HOST = "omero.biozentrum.unibas.ch"
+PORT = 4064
+# datasetId = datasetid
+groupId = "-1"
+
+# ─── Main Code ────────────────────────────────────────────────────────────────
+
+if __name__ == "__main__":
+
+    try:
+        user_client = Client()
+        user_client.connect(HOST, PORT, USERNAME, PASSWORD)
+
+        if rm.getCount() == 0:
+            roi = imp.getRoi()
+            if roi is not None:
+                rm.addRoi(roi)
+            else:
+                IJ.log("No ROIs found in the image or ROI Manager.")
+                exit()
+
+        # Get the OMERO ID
+        title = imp.getTitle()
+        omero_id = title.split("_")[-1]
+
+        image_wpr = user_client.getImage(Long(omero_id))
+        omerotools.save_rois_to_omero(user_client, image_wpr, rm)
+
+    finally:
+        user_client.disconnect()
+
+    IJ.log("ROIs have been saved to OMERO")
+
+
+