Releases: kblin/bioinf-helperlibs
Release list
Release 0.2.2
This is release 0.2.2 of the bioinformatics helperlibs
This release adds support for writing gzipped output files in bio.seqio.
It also fixes some compatibility issues in older code and infra configs.
Detailed changes:
Kai Blin (6):
featurematch: Update for more recent biopython releases
seqio: Support writing gzipped files as well
chore: update the GitHub publish workflow
chore: Update the GitHub action test workflow
setup: Bump supported python versions in the metadata to match the versions tested on
Bump version to 0.2.2
Release 0.2.1
This is release 0.2.1 of the bioinformatics helperlibs
This is a bugfix release that mainly tweaks packaging and version settings
and changes the way we run tests. There are no functional changes.
Detailed changes:
Kai Blin (8):
setup: We're fine with recent Biopython versions again
chore: Switch testing over to GitHub Actions
chore: tweak tests
chore: Add python version detection to keep supporting python 3.5 for now
chore: Add biopython version limit logic for wheels
chore: Fix/ignore all linter errors
chore: Add a workflow to publish releases to pypi
Bump version to 0.2.1
Release 0.2.0
This is a bugfix release for bioinf-helperlibs.
Biopython release 1.77 removed Python 2 support, along
with some 2/3 compatibility logic that we relied on for
our 2/3 compatibility logic.
While release 0.1.12 works around the issue by pinning the
dependencies to an older Biopython version, this version
properly fixes the issue by also dropping Python 2 support
and the compatibility logic going along with that.
Detailed changes:
Kai Blin (2):
seqio: Remove Python 2 compatibility glue
Bump version to 0.2.0
Release 0.1.12
This is a last Python 2 compatibility fix for bioinf-helperlibs.
The recently-released Biopython 1.77 breaks the bio.seqio module.
Pin Biopython to an older version to ensure Python 2 compatibility
stays intact while not breaking more recent versions of Python.