Skip to content

Releases: martin3141/spant

spant 4.3.0

Choose a tag to compare

@martin3141 martin3141 released this 07 Jul 18:52
  • Bug fix for mr_data2bids function.
  • Bug fix for testing for GE data in fit_svs.
  • Added fit_svs_btrg_v1 function as a simple wrapper for fit_svs with defaults adjusted to improve the analysis of lower quality brain tumour spectra.

spant 4.2.0

Choose a tag to compare

@martin3141 martin3141 released this 22 Jun 11:34
  • Added rm_basis_elements function.
  • Added plot_tqn_fit_csv function.
  • Test fix for NIfTI MRS reader.

spant 4.1.0

Choose a tag to compare

@martin3141 martin3141 released this 22 May 08:01
  • Update to lsei.f to fix a warning produced by GCC 16.
  • Changed the default segmentation method to rpyants for fit_svs.

spant 4.0.0

Choose a tag to compare

@martin3141 martin3141 released this 08 May 12:05
  • qr.solve reverts to ginv for rats in rare cases where qr.solve fails.
  • fit_svs updated to only accept a single argument for remove_basis.
  • Bug fix for Siemens DICOM reader.
  • Added support for T1 tissue segmentation using binary installation of ANTs : https://github.com/antsx/ants
  • Added support for T1 defacing with the FaceOff method : https://github.com/srikash/FaceOff
  • Added cross-platform support for T1 tissue segmentation using ANTs via the rpyANTs package : https://github.com/dipterix/rpyANTs

spant 3.9.0

Choose a tag to compare

@martin3141 martin3141 released this 24 Feb 09:58
  • Added extra pre_align options to fit_svs.
  • Added extra plot to fit_svs html output to help diagnose frequency alignment problems.

spant 3.8.0

Choose a tag to compare

@martin3141 martin3141 released this 16 Dec 10:37
  • Added deface option to fit_svs.
  • Added overwrite option to fit_svs.
  • fit_svs and fit_svs_edited now accept vectorised file inputs for batch analyses.

spant 3.7.0

Choose a tag to compare

@martin3141 martin3141 released this 20 Nov 10:52
  • Added lb_renoise function for fMRS analyses.
  • Added paths2df function to help extract ID fields from a vector of paths.
  • Added trim_paths and match_files functions to help with filesystem based data discovery.

spant 3.6.0

Choose a tag to compare

@martin3141 martin3141 released this 22 Sep 14:08
  • Added mean_dyns_scheme function.
  • Millisecond option added to plot x scale.
  • Added read_basis_niidir and write_basis_niidir functions for import/export of basis sets stored as a group of NIfTI MRS files.

spant 3.5.0

Choose a tag to compare

@martin3141 martin3141 released this 18 Aug 09:18
  • Added a function to help bids sorting of MRS and MRI data : mr_data2bids.
  • Extra options to fit_svs : dfp_corr_ref_subset and w_ref_subset.
  • fit_svs default now uses the mean of all available water reference scans, rather than just the first dynamic. Set w_ref_subset = 1 to reproduce previous results.

spant 3.4.0

Choose a tag to compare

@martin3141 martin3141 released this 11 Jun 15:36
  • Added a function to read DKD's sLASER MoCo log file.
  • Bug fix for TE parameter determination from Siemens IMA files.