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Merged
joverlee521 merged 1 commit into from
May 19, 2026
Merged

pathogen-repo-build: Ensure build.log is uploaded #169

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4 changes: 3 additions & 1 deletion .github/workflows/pathogen-repo-build.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -332,13 +332,15 @@ jobs:
# shellcheck disable=SC2154
set -x

exit_status=0
# tee build output to .git/ to avoid
# https://github.com/nextstrain/.github/issues/77#issuecomment-1998652064
# After build is complete, move .git/build.log to the working directory
# so this is kept as an implementation detail
eval "$NEXTSTRAIN_BUILD_COMMAND" |& tee .git/"$NEXTSTRAIN_BUILD_LOG"
eval "$NEXTSTRAIN_BUILD_COMMAND" |& tee .git/"$NEXTSTRAIN_BUILD_LOG" || exit_status=$?

mv .git/"$NEXTSTRAIN_BUILD_LOG" "$NEXTSTRAIN_BUILD_LOG"
exit $exit_status
# Attempt to get the AWS Batch ID even if the run build command failed
# as long as the runtime is `aws-batch` and the `NEXTSTRAIN_BUILD_LOG` file exists
- if: ${{ always() && inputs.runtime == 'aws-batch' && hashFiles(env.NEXTSTRAIN_BUILD_LOG) != '' }}
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4 changes: 3 additions & 1 deletion .github/workflows/pathogen-repo-build.yaml.in
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Original file line number Diff line number Diff line change
Expand Up @@ -310,13 +310,15 @@ jobs:
# shellcheck disable=SC2154
set -x

exit_status=0
# tee build output to .git/ to avoid
# https://github.com/nextstrain/.github/issues/77#issuecomment-1998652064
# After build is complete, move .git/build.log to the working directory
# so this is kept as an implementation detail
eval "$NEXTSTRAIN_BUILD_COMMAND" |& tee .git/"$NEXTSTRAIN_BUILD_LOG"
eval "$NEXTSTRAIN_BUILD_COMMAND" |& tee .git/"$NEXTSTRAIN_BUILD_LOG" || exit_status=$?

mv .git/"$NEXTSTRAIN_BUILD_LOG" "$NEXTSTRAIN_BUILD_LOG"
exit $exit_status

# Attempt to get the AWS Batch ID even if the run build command failed
# as long as the runtime is `aws-batch` and the `NEXTSTRAIN_BUILD_LOG` file exists
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