feat: treat CDS as a valid feature for GFFs in load_features#1332
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corneliusroemer wants to merge 1 commit into
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feat: treat CDS as a valid feature for GFFs in load_features#1332corneliusroemer wants to merge 1 commit into
load_features#1332corneliusroemer wants to merge 1 commit into
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We currently don't load CDS features from GFF files Within Nextclade, we now treat CDS as the translatable unit, not gene So to use Nextclade GFF annotations in ancestral, we need to be able to read in CDS features Reading in CDS in addition to gene and source could potentially break some workflows that use gffs that have both gene and CDS features
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## master #1332 +/- ##
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Coverage 65.79% 65.79%
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Files 68 68
Lines 7151 7151
Branches 1757 1757
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Hits 4705 4705
Misses 2182 2182
Partials 264 264 ☔ View full report in Codecov by Sentry. |
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Is this still desired? I noticed |
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Superseded by #1664 |
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We currently don't load CDS features from GFF files
Within Nextclade, we now treat CDS as the translatable unit, not gene
So to use Nextclade GFF annotations in ancestral, we need to be able to read in CDS features
Reading in CDS in addition to gene and source could potentially break some workflows that use gffs that have both gene and CDS features