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nextstrain / seasonal-flu Public

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[ingest] general curation fixes#267

Merged

jameshadfield merged 15 commits into

masternextstrain/seasonal-flu:masterfrom

james/ingest-use-epi-isl-as-keynextstrain/seasonal-flu:james/ingest-use-epi-isl-as-keyCopy head branch name to clipboard

Dec 7, 2025

Conversation Commits15 (15)Checks Files changed

Merged

[ingest] general curation fixes#267
jameshadfield merged 15 commits into
masterfrom
james/ingest-use-epi-isl-as-key

Commits

Commits on Dec 7, 2025

[dev] add script to compare NDJSONs
jameshadfield
committed
[ingest] use ISL for hardcoded annotations
jameshadfield
committed
[ingest] apply lineage annotations early
jameshadfield
committed
[ingest] remove unnecessary lineage annotations
jameshadfield
committed
[ingest] drop conflicting lineage annotations
jameshadfield
committed
[dev] show script name in log output
jameshadfield
committed
[ingest] type/subtype/lineage for all records
jameshadfield
committed
[ingest] Minor refactoring of location parsing
jameshadfield
committed
[ingest] allow location annotations
jameshadfield
committed
[ingest] change geographic null value
jameshadfield
committed
[ingest] allow location rules
jameshadfield
committed
[ingest] add location fixes
jameshadfield
committed
[ingest] flag duplicate strain/location fixes
jameshadfield
committed
[ingest] [to revert] hide warnings re: duplicates
jameshadfield
committed
[ingest] start curation docs
jameshadfield
committed

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