Repositories list

• Pioneer-Finetune-Release

  Public
  Offline fine-tuning of seizure-detection models (SPaRCNet, WaveNet, ONCET) for the Pioneer study.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 5, 2026Aug 5, 2026

• Pioneer-Chat-Release

  Public
  Chat interface for patient-AI engagement in epilepsy monitoring units. Research code for the Pioneer study.

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 27, 2026Jul 27, 2026

• seizure-annotation-dataset

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2026Jul 22, 2026

• Pioneer-Analysis-Release

  Public
  Manuscript and supplemental analysis notebooks for the Pioneer study

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 25, 2026May 25, 2026

• Pioneer-Databricks-Release

  Public
  Real-time EEG processing pipeline in Databricks (DLT) for the Pioneer Study.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• stim-responses

  Public
  Codebase for "Interictal spike rates track acute changes in cortical excitability during stimulation for drug-resistant epilepsy"

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 19, 2026May 19, 2026

• which_montage_project

  Public
  Code for which montage project

  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 8, 2026May 8, 2026

• yolo_sop_detection

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• FlowGAN

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2026Feb 17, 2026

• ieeg-sleep-clipper

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 22, 2026Jan 22, 2026

• RNS_Annotation-Pipeline

  Public
  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 19, 2025Dec 19, 2025

• scalp_tle_laterality

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 16, 2025Oct 16, 2025

• scalp_lateralization

  Public
  Calculator to lateralize TLE

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2025Sep 30, 2025

• stim-seizures-manuscript

  Public
  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•22 stars•11 issue•00 pull requests•Updated Sep 5, 2025Sep 5, 2025

• Pennsieve-Demo-ICTALS-2025

  Public
  Open-access neuroinformatics for data sharing and analysis at scale.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 31, 2025May 31, 2025

• 3t_7t

  Public
  Repository for manuscript: Seizure-onset zone lateralization in temporal lobe epilepsy using 7T rs-fMRI: Direct comparison with 3T rs-fMRI

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 17, 2025May 17, 2025

• CNT-codehub

  Public
  Code repository and pipeline manager for Penn’s Center for Neuroengineering & Therapeutics.

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Apr 30, 2025Apr 30, 2025

• scalp_deep-learning

  Public
  Code repository and pipeline manager for Penn’s Center for Neuroengineering & Therapeutics.

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Apr 29, 2025Apr 29, 2025

• BIDSIFY

  Public
  Package for creating BIDS datasets for a wide variety of epilepsy data.

  Python

  •11 fork•22 stars•00 issues•00 pull requests•Updated Apr 9, 2025Apr 9, 2025

• CNT_Preprocessing_Toolkit

  Public
  Toolkit for pre-processing of intracranial EEG data, and an interactive pipeline for pre-processing method evaluation.

  Jupyter Notebook

  •33 forks•22 stars•00 issues•00 pull requests•Updated Mar 3, 2025Mar 3, 2025

• emulated_comparative_effectiveness

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 9, 2025Jan 9, 2025

• IEEG_Spike-Morphology

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 20, 2024Nov 20, 2024

• ieeg-recon

  Public
  IEEG electrode reconstruction: modular pipeline in MATLAB and Python

  Python

  •33 forks•1010 stars•33 issues•00 pull requests•Updated Nov 16, 2024Nov 16, 2024

• epilepsy_lateralization

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 11, 2024Sep 11, 2024

• Pattnaik-sleep-atlas

  Public
  Code for normative atlases in sleep

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 9, 2024Sep 9, 2024

• cnt_tle_laterality

  Public
  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 14, 2024Aug 14, 2024

• Sixth_Sense

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 28, 2024Jul 28, 2024

• pennsieve-workflow_bid-validator

  Public
  A simple workflow for Pennsieve to validate bids datasets.

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 17, 2024Jul 17, 2024

• collaborator_repository

  Public
  Repository for sharing code with collaborators

  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 3, 2024Apr 3, 2024

• RNS_STIM-MORPHOLOGY

  Public
  Analyzing how the functional and structural connectome predict response to repeated therapeutic stimulation.

  MATLAB

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 4, 2024Mar 4, 2024