E-value and alignment quality (AQ) are deprecated
I now believe E-values behave differently for structure search compared to amino acid sequence search, for example high E-values ≫1 are sometimes very significant at AFDB scale. Instead, I recommend you use the p-value which is independent of database size.
Default columns have changed
If you have a script which uses defaults you will need to update it. You can specify the previous default columns using
reseek ... -columns aq+query+target+evalue+pvalue
New columns with query coverage and target coverage
Column names are qcovpct and tcovpct to address issue 23.
Query and target columns swapped
This bug is now fixed, see issue 18.