Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.
A toolkit for working with ATAC-seq data.
High-performance FASTQ/FASTA quality analysis tool written in Rust — HTML reports, adapter trimming, k-mer analysis, N50/N90, duplication estimation, and real-time TUI
3'Adapter in small RNA sequencing
High-performance Julia tool for sequence demultiplexing
C++ implementation of Buenrostro adapter trimming
Adapter+Barcode trimming from Pacbio HiFi reads
Modular FASTQ preprocessing pipeline for quality control (FastQC/MultiQC) and adapter trimming (Cutadapt/Trimmomatic) of NGS sequencing data
Fork de rrwick/Porechop — trimming de adaptadores Nanopore (discontinuado)
ATACSeq Analysis Pipeline & Workflow (Jack Freeland / jfreeland01)
Sequencing adapters and contaminants collected from different tools for easy download
A modular, contract‑driven, SLURM‑compatible HPC pipeline for adapter removal and quality trimming of paired‑end FASTQ sequencing data using BBDUK or Trimmomatic, featuring explicit execution ABI, strict preflight validation, and restart‑safe per‑sample processing.
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