Spatial Single Cell Analysis in Python
Learning cell communication from spatial graphs of cells
MCP server for spatial transcriptomics analysis through natural language interfaces.
End-to-end CODEX multiplex IF analysis pipeline that includes cell segmentation, phenotyping, and spatial neighborhood analysis on the Schürch/Nolan CRC dataset
An open-source eduAn open-source educational framework for Spatial Transcriptomics and Single-Cell AI analysis in Python.
Spatial transcriptomics analysis using 10x Genomics Visium and Xenium platforms
End-to-end spatial transcriptomics pipeline for 10x Genomics Visium human brain glioblastoma — cell type annotation, GBM subtype characterization, and spatial neighborhood analysis
10X Visium spatial transcriptomics analysis with Squidpy
A spatial transcriptomics agent skill. Not a tool executor — a thinking partner. Three modes named after Greek philosophers: Aristotle (empiricist), Plato (dialectician), Socrates (gadfly). BioMCP-powered.
Spatial transcriptomics analysis of human DLPFC Visium data with SVG detection, clustering benchmark, Tangram mapping, and neighborhood analysis.
10x Visium spatial transcriptomics pipeline — Squidpy, Moran's I, neighborhood enrichment, TLS-like niche detection | Workflow demonstration | Python
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