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Update cwl-utils to custom branch again #304

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Merged
alexiswl merged 1 commit into from
Jun 17, 2025
Merged

Update cwl-utils to custom branch again #304

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16 changes: 15 additions & 1 deletion Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ ARG ICAV2_PLUGINS_CLI_VERSION="v2.27.0"
ARG ICAV2_PLUGINS_CLI_CONDA_PYTHON_VERSION="3.12"
ARG ICAV2_PLUGINS_CLI_CONDA_ENV_NAME="python3.12"
ARG CWL_UTILS_REPO_PATH="https://github.com/alexiswl/cwl-utils"
ARG CWL_UTILS_REPO_BRANCH="enhancement/cwl-inputs-schema-gen"
ARG CWL_UTILS_REPO_BRANCH="bugfix/auto-return-input-array-schema-type"

ARG MINIFORGE_NAME="Miniforge3"
ARG MINIFORGE_VERSION="24.3.0-0"
Expand Down Expand Up @@ -174,5 +174,19 @@ ENV PATH="/home/${GITHUB_ACTIONS_USER_NAME}/.conda/envs/${CONDA_ENV_NAME}/bin:${
# Set ICAv2 CLI plugins home
ENV ICAV2_CLI_PLUGINS_HOME="/home/${GITHUB_ACTIONS_USER_NAME}/.icav2-cli-plugins/"

# Add cwl-utils (with cwl-inputs-schema-gen) to cwl-ica environment
RUN ( \
cd "/home/${GITHUB_ACTIONS_USER_NAME}" && \
echo "Cloning cwl-utils" 1>&2 && \
git clone --branch "${CWL_UTILS_REPO_BRANCH}" "${CWL_UTILS_REPO_PATH}" "cwl-utils" && \
echo "Installing cwl-utils" 1>&2 && \
( \
cd 'cwl-utils' && \
"/home/${GITHUB_ACTIONS_USER_NAME}/.conda/envs/${CONDA_ENV_NAME}/bin/pip" install . \
) && \
echo "Cleaning up" 1>&2 && \
rm -rf cwl-utils \
)

# Set entrypoint
CMD "cwl-ica"