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Output-collision detection is approximate, and --stats/--metrics are unguarded

Status: Open.

#715 In fulcrumgenomics/fgumi;

· nh13 opened on Aug 5, 2026

perf(sort): skip the sort entirely when the input header already declares the requested order

enhancementNew feature or requestNew feature or request

Status: Open.

#710 In fulcrumgenomics/fgumi;

· nh13 opened on Aug 3, 2026

Deadlock watchdog: a ByteBounded edge of zero-heap items reads as zero bytes in flight

enhancementNew feature or requestNew feature or request

fgumi runall

Status: Open.

#707 In fulcrumgenomics/fgumi;

· nh13 opened on Aug 3, 2026

simulate: grouped-reads emits non-monotonic MI ids, so its output is rejected by compare bams --command group

Status: Open.

#687 In fulcrumgenomics/fgumi;

· nh13 opened on Aug 1, 2026

umi: paired's k>1 BK-tree path is unmeasured, and the edit index has no -e 2/-e 3 benchmark arm

Status: Open.

#664 In fulcrumgenomics/fgumi;

· nh13 opened on Jul 26, 2026

audit: consensus tag integer widths differ between the BAM and SAM input paths

Status: Open.

#655 In fulcrumgenomics/fgumi;

· nh13 opened on Jul 25, 2026

perf: TemplateIterator allocates a RawRecord per record; needs a buffer pool

Status: Open.

#654 In fulcrumgenomics/fgumi;

· nh13 opened on Jul 25, 2026

group: parallel paired assigner drops the UMI split point (BitEnc encodes without the dash)

Status: Open.

#586 In fulcrumgenomics/fgumi;

· nh13 opened on Jul 16, 2026

sort (feat-runall): --max-memory auto reserves the full budget up front in the arena front

Status: Open.

#481 In fulcrumgenomics/fgumi;

· nh13 opened on Jul 7, 2026

feat(fastq): add UMI-in-read-header output to fgumi fastq (replace samtools fastq -U)

enhancementNew feature or requestNew feature or request

Status: Open.

#480 In fulcrumgenomics/fgumi;

· nh13 opened on Jul 7, 2026

perf(bgzf): adopt store-only write fast path + optional CRC-skip from bgzf#11

Status: Open.

#478 In fulcrumgenomics/fgumi;

· nh13 opened on Jul 4, 2026

feat(extract): generalize read-name UMI extraction into a delimited-field "read-name structure"

Status: Open.

#477 In fulcrumgenomics/fgumi;

· nh13 opened on Jul 3, 2026